Alexander Weber

BSc, MSc, PhD

Investigator, BC Children's Hospital

I am interested in using non-invasive imaging techniques, such as magnetic resonance imaging (MRI), in order to help scientists and clinicians better understand brain health and disease, and how to treat an unhealthy brain. MRIs are incredibly useful for these purposes as, unlike an X-ray or a CT scan, they do not give off any harmful radiation, so people can be scanned multiple times, including babies and pregnant mothers. Additionally, MRIs are very diverse in what information they can provide, including high resolution anatomical information, the activity of the brain, specific chemicals or metabolites and their concentrations, and more. When these scans are combined, they can often give us more information together than the sum of their parts. I am interested in improving these techniques, exploring how they can be combined in novel ways, and ultimately in seeing how they can be used to tell us something new about the brain that we did not know before. It is in doing so that I hope to help treat various insults, injuries and diseases of the brain in order to help people lead better lives, or in the case of infants, setting them up on the right track.

Academic Affiliations

  • Assistant Professor, , Department of Pediatrics, Faculty of Medicine, University of British Columbia
  • Research Theme: Brain, Behaviour & Development
  • Research Group(s): Neurodevelopmental and Neurological Disorders; Visualizing the Brain

Contact Information

Location

950 West 28th Avenue, Vancouver, British Columbia, Canada, V5Z 4H4

Does the Brains E:I Balance Really Shape Long-Range Temporal Correlations? Lessons Learned from 3T MRI

Biorxiv

Sochan, L. and Archibald, J. and Weber, A.M.

DOI: 10.1101/2025.03.28.645973

The application of magnetic susceptibility separation for measuring cerebral oxygenation in preterm neonates

Pediatric Research

Carmichael, T.G. and Rauscher, A. and Grunau, R.E. and Weber, A.M.

DOI: 10.1038/s41390-025-03966-6

Assessing Semiregional Cerebral Oxygen Consumption (CMRO2) in Preterm Neonates: A Quantitative MRI Cohort Study With Exploratory Analysis of Respiratory Support

NMR in Biomedicine

Zhu, C. and Chan, N. and Chacko, A. and Holsti, L. and Grunau, R. and Weber, A.

DOI: 10.1002/nbm.70065

ECI biocommentary

Pediatric Research

Weber, A.M.

DOI: 10.1038/s41390-025-04167-x

Integrating Structural, Functional, and Biochemical Brain Imaging Data with MRShiny Brain - An Interactive Web Application

Jessica Archibald and Alexander Mark Weber and Paulina S. Scheuren and Oscar Ortiz and Cassandra Choles and Jaimie J. Lee and Niklaus Zlch and Erin L. MacMillan and John L. K Kramer

DOI: 10.55458/neurolibre.00029

12 / 2024

(GitHubRepo) Integrating Structural, Functional, and Biochemical Brain Imaging Data with MRShiny Brain - An Interactive Web Application

Zenodo

DOI: 10.5281/zenodo.14375264

12 / 2024

(LivingPreprint) Integrating Structural, Functional, and Biochemical Brain Imaging Data with MRShiny Brain - An Interactive Web Application

Zenodo

DOI: 10.5281/zenodo.14375267

12 / 2024

Iron Deficiency and Sleep/Wake Behaviors: A Scoping Review of Clinical Practice Guidelines-How to Overcome the Current Conundrum?

MDPI

DOI: 10.48350/199621

Changes in cortical grey matter volume with Cognitive Orientation to daily Occupational Performance intervention in children with developmental coordination disorder

Frontiers in Human Neuroscience

Malik, M.A. and Weber, A.M. and Lang, D. and Vanderwal, T. and Zwicker, J.G.

DOI: 10.3389/fnhum.2024.1316117

Temporal complexity of the BOLD-signal in preterm versus term infants

Cerebral Cortex

Mella, A.E. and Vanderwal, T. and Miller, S.P. and Weber, A.M.

DOI: 10.1093/cercor/bhae426

Cortical grey matter volume differences in children with developmental coordination disorder compared to typically developing children

Frontiers in Human Neuroscience

Malik, M. and Weber, A. and Lang, D. and Vanderwal, T. and Zwicker, J.G.

DOI: 10.3389/fnhum.2024.1276057

Cerebrovascular Reactivity Following Spinal Cord Injury

Topics in spinal cord injury rehabilitation

Weber, A.M. and Nightingale, T.E. and Jarrett, M. and Lee, A.H.X. and Campbell, O.L. and Walter, M. and Lucas, S.J.E. and Phillips, A. and Rauscher, A. and Krassioukov, A.V.

DOI: 10.46292/sci23-00068

Iron Deficiency and Sleep/Wake Behaviors: A Scoping Review of Clinical Practice Guidelines"How to Overcome the Current Conundrum?

Nutrients

McWilliams, S. and Hill, O. and Ipsiroglu, O.S. and Clemens, S. and Weber, A.M. and Chen, M. and Connor, J. and Felt, B.T. and Manconi, M. and Mattman, A. and Silvestri, R. and Simakajornboon, N. and Smith, S.M. and Stockler, S.

DOI: 10.3390/nu16152559

The Effects of Wearing a 3-Ply or KN95 Face Mask on Cerebral Blood Flow and Oxygenation

Journal of Magnetic Resonance Imaging

Aisling Fothergill and Christoph Birkl and Christian Kames and Wayne Su and Alexander Weber and Alexander Rauscher

DOI: 10.1002/jmri.28448

06 / 2023

Monofractal analysis of functional magnetic resonance imaging: An introductory review

Human Brain Mapping

Olivia Lauren Campbell and Alexander Mark Weber

DOI: 10.1002/hbm.25801

06 / 2022

Fractal-Based Analysis of fMRI BOLD Signal During Naturalistic Viewing Conditions

Frontiers in Physiology

Campbell, O. and Vanderwal, T. and Weber, A.M.

DOI: 10.3389/fphys.2021.809943

Orientation dependence of R2 relaxation in the newborn brain

Neuroimage

Bartels, L.M. and Doucette, J. and Birkl, C. and Zhang, Y. and Weber, A.M. and Rauscher, A.

DOI: 10.1016/j.neuroimage.2022.119702

Quantitative Susceptibility Mapping of Venous Vessels in Neonates with Perinatal Asphyxia

American Journal of Neuroradiology

A.M. Weber and Y. Zhang and C. Kames and A. Rauscher

DOI: 10.3174/ajnr.A7086

07 / 2021

Quantitative analysis of punctate white matter lesions in neonates using quantitative susceptibility mapping and R2* relaxation

American Journal of Neuroradiology

Zhang, Y. and Rauscher, A. and Kames, C. and Weber, A.M.

DOI: 10.3174/ajnr.A6114

Myelin water imaging and R 2 * mapping in neonates: Investigating R 2 * dependence on myelin and fibre orientation in whole brain white matter

NMR in Biomedicine

Alexander Mark Weber and Yuting Zhang and Christian Kames and Alexander Rauscher

DOI: 10.1002/nbm.4222

Pathological Insights From Quantitative Susceptibility Mapping and Diffusion Tensor Imaging in Ice Hockey Players Pre and Post-concussion.

Frontiers in neurology

DOI: 10.3389/fneur.2018.00575 PubMed: 30131752

08 / 2018

Imaging the Role of Myelin in Concussion.

Neuroimaging clinics of North America

DOI: 10.1016/j.nic.2017.09.005 PubMed: 29157855

10 / 2017

Proton magnetic resonance spectroscopy of prefrontal white matter in psychotropic nave children and adolescents with obsessive-compulsive disorder

Psychiatry Research - Neuroimaging

Weber, A.M. and Soreni, N. and Stanley, J.A. and Greco, A. and Mendlowitz, S. and Szatmari, P. and Schachar, R. and Mannasis, K. and Pires, P. and Swinson, R. and Noseworthy, M.D.

DOI: 10.1016/j.pscychresns.2014.02.004

A preliminary study of functional connectivity of medication nave children with obsessive-compulsive disorder

Progress in Neuro-Psychopharmacology and Biological Psychiatry

Weber, A.M. and Soreni, N. and Noseworthy, M.D.

DOI: 10.1016/j.pnpbp.2014.04.001

A preliminary study on the effects of acute ethanol ingestion on default mode network and temporal fractal properties of the brain

Magnetic Resonance Materials in Physics, Biology and Medicine

Weber, A.M. and Soreni, N. and Noseworthy, M.D.

DOI: 10.1007/s10334-013-0420-5

Metabolite measurements in the caudate nucleus, anterior cingulate cortex and hippocampus among patients with mitochondrial disorders: a case-control study using proton magnetic resonance spectroscopy.

CMAJ open

DOI: 10.9778/cmajo.20120020 PubMed: 25077102

01 / 2013

N-type Ca2+ channels carry the largest current: Implications for nanodomains and transmitter release

Nature Neuroscience

Weber, A.M. and Wong, F.K. and Tufford, A.R. and Schlichter, L.C. and Matveev, V. and Stanley, E.F.

DOI: 10.1038/nn.2657

PDLIM5 is not a neuronal CaV2.2 adaptor protein

Nature Neuroscience

Gardezi, S.R. and Weber, A.M. and Li, Q. and Wong, F.K. and Stanley, E.F.

DOI: 10.1038/nn0809-957a

Current Research Projects

I am looking for graduate students and postdoctoral fellows to join my lab. My ideal candidate is someone with experience programming (python, linux/bash, git, matlab, R), a multidisciplinary interest and background, curious, driven, humble, and good communication/interpersonal skills.
I am also looking for exciting new collaborations with other clinicians and investigators.

Currently, my lab is focused on one project:

Fractal Analysis of fMRI Signals


Since the 1990s, it has been suggested that the brain operates in a critical state between order and disorder. Systems that exist in a critical state exhibit scale-invariance, power-law distributions, fractal geometry, and long-range correlations. Evidence to support the brain criticality hypothesis comes from many different avenues, both spatial (dendritic branching and small-world network connectivity), and temporal (neurotransmitter release, neuronal firing, local field potentials, and MEG, EEG, and fMRI signals), suggesting that in the brain, criticality is the rule, not the exception. It has been further theorized that existing in this state maximizes signalling efficiency, storage capacity, and flexibility. Thus, being able to properly identify and measure criticality is a key component in trying to understand how the brain functions. Unfortunately, in a rush to investigate and publish findings on criticality in fMRI neuroimaging, a rigorous testing of the assumptions and algorithms used for these purposes has not yet been performed.

Specifically, the aim of our study is to investigate how to properly analyze functional MRI time-series using fractal mathematics. This sort of analysis has shown some promise as a biomarker in concussions, Alzheimers, autism and more. Specifically, we hope to develop a signal-processing tool in Python that will: 1) test whether a signal follows a power-law distribution; 2) categorize the signal as either fractional Gaussian noise (fGn) or fractional Brownian motion (fBm); and 3) accurately report the signal’s Hurst exponent (H) value between 0 and 1. Eventually the tool will be used to investigate the nature of fMRI signals and the effects of various preprocessing methods, before being used to investigate physiological and clinical problems. In addition, the software will be made available online for free for other researchers to use.

Others

I also have experience and interest in the following subjects: preterm birth; brain development; cerebral vascular health; quantitative susceptibility mapping; concussion / TBI; obsessive compulsive disorder; brain intoxication; brain networks; resting state networks; diffusion tensor imaging; myelin water imaging; machine learning and deep learning;

Grants

NSERC Discovery Grant - Mapping the Structural and Functional Development of the Brain in the First Year of Life: A State-of-the-Art Quantitative MRI Approach - $212,500 – 2024-2029 – PI

CIHR - Brain Connectome and Neurodevelopment in Neonatal Hypoxic-Ischemic Encephalopathy - $615,000 – 2025-2030 – Co-Investigator; PI = Thiviya Selvanathan

BCCHRI Catalyst Grant - Brain and Motor Development of Young Children - $20,000 – 2025-2026 – CoPI with Jill Zwicker

BCCHRI Catalyst Grant - Brain development in infants who receive CALMER - $20,000 – 2025-2026 – CoI; PIs = Liisa Holsti and Manon Ranger

Honours & Awards

Supervisor Recognition Award - UBC Science Co-op - 2021

BC Children's Hospital Research Institute Child & Family Research Institute M.I.N.D. Postdoctoral Fellowship - $100,000 - July 2016 – July 2018

School of Biomedical Engineering, McMaster University - Dr. David Williams Award in Biomedical Engineering - $1,000 - November 2012

Natural Sciences and Engineering Research Council - NSERC Postgraduate Scholarship (PGS D) - $63,000 – 2010-2012

Neuroscience Program, University of Toronto - UofT Neuroscience Program CAN-2009 Travel Award - $500 - May 2009

University of Toronto – UofT Fellowship - $1,600 – September 2008

Department of Physiology, University of Toronto - UofT Dept. of Physiology Scholarship - $2,000 – September 2007

Department of Chemistry, University of Toronto - David L. Coffen Memorial Scholarship in Organic Chemistry - $800 - February 2006

Natural Sciences and Engineering Research Council - NSERC Undergraduate Student Research Award - $6,500 - Summer 2005

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