James Lim

PhD

Investigator, Michael Cuccione Childhood Cancer Research Program, BC Children's Hospital

A unifying focus of my laboratory-based research activities at BC Children's Hospital Research Institute is understanding both the desired and adverse effects of chemo and other therapies in pediatric cancers. The Lim laboratory employs a multi-disciplinary approach that encompasses cell biology, protein biochemistry, molecular biology, and immunology.

Academic Affiliations

  • Associate Professor, , Department of Pediatrics, Faculty of Medicine, University of British Columbia
  • Research Theme: Childhood Diseases
  • Research Group(s): Childhood Cancer and Blood Research

Contact Information

Location

950 West 28th Avenue, Vancouver, British Columbia, Canada, V5Z 4H4

CD47-ligation induced cell death in T-acute lymphoblastic leukemia

Cell Death & Disease

Pascal Leclair and Chi-Chao Liu and Mahdis Monajemi and Gregor S. Reid and Laura M. Sly and Chinten James Lim

DOI: 10.1038/s41419-018-0601-2

05 / 2018

Autocrine IL-6/STAT3 signaling aids development of acquired drug resistance in Group 3 medulloblastoma

Cell Death & Disease

Lakshana Sreenivasan and Hui Wang and Shyong Quin Yap and Pascal Leclair and Anthony Tam and Chinten James Lim

DOI: 10.1038/s41419-020-03241-y

12 / 2020

a-Integrin expression and function modulates presentation of cell surface calreticulin

Cell Death Dis

Liu, C. C. and Leclair, P. and Monajemi, M. and Sly, L. M. and Reid, G. S. and Lim, C. J.

DOI: 10.1038/cddis.2016.176

Switching Cyclic Nucleotide-Selective Activation of Cyclic Adenosine Monophosphate-Dependent Protein Kinase Holoenzyme Reveals Distinct Roles of Tandem Cyclic Nucleotide-Binding Domains

ACS Chemical Biology

Daniel He and Robin Lorenz and Choel Kim and Friedrich W. Herberg and Chinten James Lim

DOI: 10.1021/acschembio.7b00732

12 / 2017

The membrane-proximal kxgffkr motif of a-integrin mediates chemoresistance

Molecular and Cellular Biology

Liu, C.-C. and Leclair, P. and Yap, S.Q. and Lim, C.J.

DOI: 10.1128/MCB.00580-13

Integrins and ERp57 Coordinate to Regulate Cell Surface Calreticulin in Immunogenic Cell Death

Frontiers in Oncology

Liu, Chi-Chao and Leclair, Pascal and Pedari, Foujan and Vieira, Heidi and Monajemi, Mahdis and Sly, Laura M. and Reid, Gregor S. and Lim, Chinten James

DOI: 10.3389/fonc.2019.00411

05 / 2019

FAM13A as potential therapeutic target in modulating TGF-beta-induced airway tissue remodeling in COPD

American Journal of Physiology-Lung Cellular and Molecular Physiology

Anthony Tam and Pascal Leclair and Ling Vicky Li and Chen X Yang and Xuan Li and Dominik Witzigmann and Jayesh A Kulkarni and Tillie-Louise Hackett and Delbert R. Dorscheid and Gurpreet K Singhera and James C. Hogg and Pieter R Cullis and Don D. Sin and Chinten James Lim

DOI: 10.1152/ajplung.00477.2020

06 / 2021

Regulation of CD47-mediated cell death by p21-activated kinases

Chinten Lim and Pascal Leclair and Anuli Uzozie and Amanda Lorentzian and Nina Rolf and Christopher Maxwell and Gregor Reid and Philipp Lange

DOI: 10.21203/rs.3.rs-8940785/v1

03 / 2026

Proteomics and personalized PDX models identify treatment for a progressive malignancy within an actionable timeframe

EMBO Molecular Medicine

Georgina D Barnabas and Tariq Ahmad Bhat and Verena Goebeler and Pascal Leclair and Nadine Azzam and Nicole Melong and Colleen Anderson and Alexis Gom and Seohee An and Enes K Ergin and Yaoqing Shen and Agustina Conrrero and Andrew Mungall and Karen L Mungall and Christopher Maxwell and Gregor Reid and Martin Hirst and Steven Jones and Jennifer Chan and Donna Senger and Jason Berman and Seth Parker and Jonathan Bush and Caron Strahlendorf and Rebecca Deyell and Chinten James Lim and Philipp F. Lange

DOI: 10.1038/s44321-025-00212-8

04 / 2025

Proteomics and personalized patient-derived xenograft models identify treatment opportunities for a progressive malignancy within a clinically actionable timeframe and change care

Georgina D. Barnabas and Tariq A. Bhat and Verena Goebeler and Pascal Leclair and Nadine Azzam and Nicole Melong and Colleen Anderson and Alexis Gom and Seohee An and Enes K. Ergin and Yaoqing Shen and Andy J. Mungall and Karen L. Mungall and Christopher A. Maxwell and Gregor S.D. Reid and Martin Hirst and Steven Jones and Jennifer A. Chan and Donna L. Senger and Jason N. Berman and Seth J. Parker and Jonathan W. Bush and Caron Strahlendorf and Rebecca J. Deyell and Chinten J. Lim and Philipp F. Lange and PROFYLE Program

DOI: 10.1101/2024.07.04.24309923

07 / 2024

DDIT4L regulates mitochondrial and innate immune activities in early life

JCI Insight

Christina Michalski and Claire Cheung and Ju Hee Oh and Emma Ackermann and Constantin R. Popescu and Anne-Sophie Archambault and Martin A. Prusinkiewicz and Rachel Da Silva and Abdelilah Majdoubi and Marina Vieta Paramo and Rui Yang Xu and Frederic Reicherz and Annette E. Patterson and Liam Golding and Ashish Arunkumar Sharma and Chinten J. Lim and Paul C. Orban and Ramon Klein Geltink and Pascal M. Lavoie

DOI: 10.1172/jci.insight.172312

02 / 2024

Targetable lesions and proteomes predict therapy sensitivity through disease evolution in pediatric acute lymphoblastic leukemia

Nature Communications

Amanda C. Lorentzian and Jenna Rever and Enes K. Ergin and Meiyun Guo and Neha M. Akella and Nina Rolf and C. James Lim and Gregor S. D. Reid and Christopher A. Maxwell and Philipp F. Lange

DOI: 10.1038/s41467-023-42701-9

11 / 2023

Hedgehog Signaling as a Therapeutic Target for Airway Remodeling and Inflammation in Allergic Asthma

Cells

Anthony Tam and Osei ET and Chung Y. Cheung and Michael R. Hughes and Chen X. Yang and Kelly McNagny and Delbert R. Dorscheid and Gurpreet Singhera and Teal S. Hallstrand and Stephanie Warner and James C. Hogg and Tillie-Louise Hackett and Chinten James Lim and Don Sin

DOI: 10.3390/cells11193016

09 / 2022

Targeting the gp130/STAT3 Axis Attenuates Tumor Microenvironment Mediated Chemoresistance in Group 3 Medulloblastoma Cells

Cells

Lakshana Sreenivasan and Ling Vicky Li and Pascal Leclair and Chinten James Lim

DOI: 10.3390/cells11030381

01 / 2022

Inflammatory Immune Responses Trigger Rejection of Allogeneic Fibroblasts Transplanted into Mouse Skin

Cell Transplantation

Ali Farrokhi and MohammadReza Rahavi and Sumin Jo and Reza Jalili and C. James Lim and Aziz Ghahsary and Gregor S. D. Reid

DOI: 10.1177/09636897221113803

01 / 2022

A cross-standardized flow cytometry platform to assess phenotypic stability in precursor B-cell acute lymphoblastic leukemia (B-ALL) xenografts

Cytometry Part A

Nina Rolf and Lorraine Y. T. Liu and Angela Tsang and Philipp F. Lange and Chinten James Lim and Christopher A. Maxwell and Suzanne M. Vercauteren and Gregor S. D. Reid

DOI: 10.1002/cyto.a.24473

01 / 2022

PDX models reflect the proteome landscape of pediatric acute lymphoblastic leukemia but divert in select pathways

Journal of Experimental & Clinical Cancer Research

Anuli C. Uzozie and Enes K. Ergin and Nina Rolf and Janice Tsui and Amanda Lorentzian and Samuel S. H. Weng and Lorenz Nierves and Theodore G. Smith and C. James Lim and Christopher A. Maxwell and Gregor S. D. Reid and Philipp F. Lange

DOI: 10.1186/s13046-021-01835-8

12 / 2021

CD47 (Cluster of differentiation 47): an anti-phagocytic receptor with a multitude of signaling functions

Animal Cells and Systems

Pascal Leclair and Chinten James Lim

DOI: 10.1080/19768354.2020.1818618

09 / 2020

Co-culture of induced pluripotent stem cells with cardiomyocytes is sufficient to promote their differentiation into cardiomyocytes

PLOS ONE

Axel J. Chu and Eric Jiahua Zhao and Mu Chiao and Chinten James Lim

DOI: 10.1371/journal.pone.0230966

04 / 2020

Peptide analogues PKHB1 and 4N1K induce cell death through CD47-independent mechanisms

Cancer Science

Pascal Leclair and Min Jung Kim and Chinten James Lim

DOI: 10.1111/cas.14310

03 / 2020

Tailoring the homing capacity of human Tregs for directed migration to sites of Th1-inflammation or intestinal regions

American Journal of Transplantation

Hoeppli, R. E. and MacDonald, K. N. and Leclair, P. and Fung, V. C. W. and Mojibian, M. and Gillies, J. and Rahavi, S. M. R. and Campbell, A. I. M. and Gandhi, S. K. and Pesenacker, A. M. and Reid, G. and Lim, C. J. and Levings, M. K.

DOI: 10.1111/ajt.14936

01 / 2019

Tumor Variant Identification That Accounts for the Unique Molecular Landscape of Pediatric Malignancies.

JNCI cancer spectrum

DOI: 10.1093/jncics/pky079 PubMed: 30976750

10 / 2018

Reactive oxygen species stress increases accumulation of tyrosyl-DNA phsosphodiesterase 1 within mitochondria

Scientific Reports

Hok Khim Fam and Kunho Choi and Lauren Fougner and Chinten James Lim and Cornelius F. Boerkoel

DOI: 10.1038/s41598-018-22547-8

03 / 2018

Combination therapy with proteasome inhibitors and TLR agonists enhances tumour cell death and IL-1 production

Cell Death & Disease

Anthony C Tang and Seyed M Rahavi and Shan-Yu Fung and Henry Y Lu and Hong Yang and Chinten J Lim and Gregor S Reid and Stuart E Turvey

DOI: 10.1038/s41419-017-0194-1

02 / 2018

A magnetically actuated cellular strain assessment tool for quantitative analysis of strain induced cellular reorientation and actin alignment

Review of Scientific Instruments

F. Khademolhosseini and C.-C. Liu and C. J. Lim and M. Chiao

DOI: 10.1063/1.4960567

08 / 2016

Magnetically actuated microstructured surfaces can actively modify cell migration behaviour

Biomedical microdevices

Khademolhosseini, F. and Liu, C.-C. and Lim, C.J. and Chiao, M.

DOI: 10.1007/s10544-016-0033-7

Janus films with stretchable and waterproof properties for wound care and drug delivery applications

RSC Advances

Ethan Lee and Hongbin Zhang and John K. Jackson and Chinten James Lim and Mu Chiao

DOI: 10.1039/C6RA16232K

Application of periodic loads on cells from magnetic micropillar arrays impedes cellular migration

Proceedings of the IEEE International Conference on Micro Electro Mechanical Systems (MEMS)

Khademolhosseini, F. and Liu, C.-C. and Lim, C.J. and Chiao, M.

DOI: 10.1109/MEMSYS.2015.7051033

Rational design of a PKA-based sensor for cGMP

BMC Pharmacology and Toxicology

Robin Lorenz and Daniel He and Choel Kim and Chinten J Lim and Friedrich W Herberg

DOI: 10.1186/2050-6511-16-s1-a64

Arginase activity in alternatively activated macrophages protects PI3Kp110d deficient mice from dextran sodium sulfate induced intestinal inflammation

European Journal of Immunology

Weisser, S.B. and Kozicky, L.K. and Brugger, H.K. and Ngoh, E.N. and Cheung, B. and Jen, R. and Menzies, S.C. and Samarakoon, A. and Murray, P.J. and Lim, C.J. and Johnson, P. and Boucher, J.-L. and van Rooijen, N. and Sly, L.M.

DOI: 10.1002/eji.201343981

Spatial regulation of Aurora A activity during mitotic spindle assembly requires RHAMM to correctly localize TPX2

Cell Cycle

Chen, H. and Mohan, P. and Jiang, J. and Nemirovsky, O. and He, D. and Fleisch, M.C. and Niederacher, D. and Pilarski, L.M. and Lim, C.J. and Maxwell, C.A.

DOI: 10.4161/cc.29270

CD47-independent effects mediated by the TSP-derived 4N1K peptide

PLoS ONE

Leclair, P. and Lim, C.J.

DOI: 10.1371/journal.pone.0098358

Two modes of integrin activation form a binary molecular switch in adhesion maturation

Molecular Biology of the Cell

Lee, H.-S. and Anekal, P. and Lim, C.J. and Liu, C.-C. and Ginsberg, M.H.

DOI: 10.1091/mbc.E12-09-0695

The Conserved Kxgffkr Motif of alpha-Integrin Cytoplasmic Tail Mediates Chemoresistance to Doxorubicin in T-Cell Leukemia

Blood

Liu, Chi-Chao and Leclair, Pascal and He, Daniel and Yap, Eva and Lim, Chinten James

Protein tyrosine phosphatase a Phosphotyrosyl-789 binds BCAR3 to position cas for activation at integrin-mediated focal adhesions

Molecular and Cellular Biology

Sun, G. and Cheng, S.Y.S. and Chen, M. and Lim, C.J. and Pallen, C.J.

DOI: 10.1128/MCB.00214-12

RIAM activates integrins by linking talin to Ras GTPase membrane-targeting sequences

Journal of Biological Chemistry

Lee, H.-S. and Lim, C.J. and Puzon-McLaughlin, W. and Shattil, S.J. and Ginsberg, M.H.

DOI: 10.1074/jbc.M807117200

Slit2-Robo4 signalling promotes vascular stability by blocking Arf6 activity

Nature Cell Biology

Jones, C.A. and Nishiya, N. and London, N.R. and Zhu, W. and Sorensen, L.K. and Chan, A.C. and Lim, C.J. and Chen, H. and Zhang, Q. and Schultz, P.G. and Hayallah, A.M. and Thomas, K.R. and Famulok, M. and Zhang, K. and Ginsberg, M.H. and Li, D.Y.

DOI: 10.1038/ncb1976

integrin tyrosine phosphorylation is a conserved mechanism for regulating talin-induced integrin activation

Journal of Biological Chemistry

Anthis, N.J. and Haling, J.R. and Oxley, C.L. and Memo, M. and Wegener, K.L. and Lim, C.J. and Ginsberg, M.H. and Campbell, I.D.

DOI: 10.1074/jbc.M109.061275

Integrin-mediated protein kinase a activation at the leading edge of migrating cells

Molecular Biology of the Cell

Lim, C.J. and Kain, K.H. and Tkachenko, E. and Goldfinger, L.E. and Gutierrez, E. and Allen, M.D. and Groisman, A. and Zhang, J. and Ginsberg, M.H.

DOI: 10.1091/mbc.E08-06-0564

a4 Integrins are Type I cAMP-dependent protein kinase-anchoring proteins

Nature Cell Biology

Lim, C.J. and Han, J. and Yousefi, N. and Ma, Y. and Amieux, P.S. and McKnight, G.S. and Taylor, S.S. and Ginsberg, M.H.

DOI: 10.1038/ncb1561

On the yellow brick road to platelet GP IIb-IIIa (Integrin alpha IIb beta 3) activation.

Blood

Watanabe, Naohide and Han, Jaewon and Lim, C. James and Soriani, Alessandra and Puzon-McLaughlin, Wilma and LaFuente, Esther M. and Boussiotis, Vassiliki A. and Ginsberg, Mark H. and Shattil, Sanford J.

Reconstructing and Deconstructing Agonist-Induced Activation of Integrin aIIb3

Current Biology

Han, J. and Lim, C.J. and Watanabe, N. and Soriani, A. and Ratnikov, B. and Calderwood, D.A. and Puzon-McLaughlin, W. and Lafuente, E.M. and Boussiotis, V.A. and Shattil, S.J. and Ginsberg, MarkH.

DOI: 10.1016/j.cub.2006.08.035

Assignment of sockeye salmon (Oncorhynchus nerka) to spawning sites using DNA markers

Marine Biotechnology

Corley-Smith, G.E. and Wennerberg, L. and Schembri, J.A. and Lim, C.J. and Cooper, K.L. and Brandhorst, B.P.

DOI: 10.1007/s10126-004-4065-z

Loss of the Dictyostelium RasC protein alters vegetative cell size, motility and endocytosis

Experimental Cell Research

Lim, C.J. and Zawadzki, K.A. and Khosla, M. and Secko, D.M. and Spiegelman, G.B. and Weeks, G.

DOI: 10.1016/j.yexcr.2005.02.002

Chemoattractant-induced Ras activation during Dictyostelium aggregation

EMBO Reports

Kae, H. and Lim, C.J. and Spiegelman, G.B. and Weeks, G.

DOI: 10.1038/sj.embor.7400151

RasC plays a role in transduction of temporal gradient information in the cyclic-AMP wave of Dictyostelium discoideum

Eukaryotic Cell

Wessels, D. and Brincks, R. and Kuhl, S. and Stepanovic, V. and Daniels, K.J. and Weeks, G. and Lim, C.J. and Spiegelman, G. and Fuller, D. and Iranfar, N. and Loomis, W.F. and Soll, D.R.

DOI: 10.1128/EC.3.3.646-662.2004

Cytoskeletal regulation by Dictyostelium Ras subfamily proteins

Journal of Muscle Research and Cell Motility

Lim, C.J. and Spiegelman, G.B. and Weeks, G.

DOI: 10.1023/A:1024471527153

RasC is required for optimal activation of adenylyl cyclase and Akt/PKB during aggregation

EMBO Journal

Lim, C.J. and Spiegelman, G.B. and Weeks, G.

DOI: 10.1093/emboj/20.16.4490

Efficient detection of DNA polymorphisms by fluorescent RAPD analysis

Biotechniques

CorleySmith, GE and Lim, CJ and Kalmar, GB and Brandhorst, BP

Production of androgenetic zebrafish (Danio rerio)

Genetics

CorleySmith, GE and Lim, CTJ and Brandhorst, BP

Current Projects

We have several active projects in the following areas:
1. Understanding the molecular basis of cell adhesion receptors and associated proteins in modifying therapeutic response in pediatric acute lymphoblastic leukemia. This work encompasses the cell death and immunomodulatory effects of the integrin-associated ‘eat me’ protein calreticulin, and the ‘don’t eat me’ protein CD47.
2. Interrogating the tumour microenvironmental sources of stimulatory cytokines that promote the aggressive transformation and treatment resistance of the childhood brain tumor, medulloblastoma.
3. Modeling for precision oncology at BCCH. This project is a multi-investigator led initiative that encompasses a bedside-to-bench approach to molecularly characterize a child’s tumor to identify particular vulnerabilities for therapeutic intervention. The Lim lab employs the chick chorioallantoic membrane (CAM) model as for PDX generation and for testing particular drug susceptibilities.

For additional context, applicants are directed to the list of lab publications available here:
https://orcid.org/0000-0001-6381-7585

Grants

Canadian Institutes of Health Research (CIHR) Operating Grant (2021-26)

Cancer Research Society & CIHR Operating Grant (2022-2024)

The Lim laboratory is a member of the Michael Cuccione Childhood Cancer Research Program of BC Children's Hospital

Honours & Awards

The Leukemia and Lymphoma Society of Canada (LLSC) OG (2010-2012)

CFI/BCKDF – Leaders Opportunity Fund (2010)

The Leukemia and Lymphoma Society (U.S.A.) – Fellow, Career Development Program (2004–07)

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